Scaffold Ga0074054_11995920

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074054_11995920

Scaffold Ga0074054_11995920

Overview

Basic Information
Taxon OID	3300006579 Open in IMG/M
Scaffold ID	Ga0074054_11995920 Open in IMG/M
Source Dataset Name	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	894
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. HDW14	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location Name	Laval, Canada
Coordinates	Lat. (^o)	45.54	Long. (^o)	-73.72	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023924	Metagenome / Metatranscriptome	208	Y
F045126	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074054_119959201	F023924	N/A	RERALRKMRVLRHTAPLNCSGQFMPHPTMLVELTAMGPTCPACGPLPPVFTCPFMHTQYLYIPGVSGMPQQGYAYAPVAQVQQGASDQSVQKALGKVAGQIGEKLGEGIVQGMFGQS*
Ga0074054_119959202	F045126	N/A	MIDLLKHGFAEAVSADAIADGLRRHAGDVASEDVDELAAVLEGYLYTVPDALAAALGMSKDPHFGRAVAFATGTILTYIFDEEDLLPEASYGVVGMIDDAYLVHGFVDSLRRMYPLAAPPIEYAAPDARTSEIAAAVLPEGVAESLRRTCESTIQVAQALFPSGQRVDAADVSFEPQLRV

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