NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074055_10009749

Scaffold Ga0074055_10009749


Overview

Basic Information
Taxon OID3300006573 Open in IMG/M
Scaffold IDGa0074055_10009749 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010965Metagenome / Metatranscriptome297Y
F032647Metagenome / Metatranscriptome179Y
F074854Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0074055_100097491F032647N/AMDLTSAAARKLAGKSSRRQFFKFLGVGSLGAGLFLTRTGVSLGAVQGCVGCGGGPCNPCFSPADICENVPGNFTCKTCQQGGGCPDG
Ga0074055_100097492F010965GGAMDLANIAARSLARRSSRRQFFKFLGAGTLGTGLFLTRTGVSLGAVTSCVGCGGGPCNPCFSPAQICENLGFPCKTCQEGGGCPTGCITSGEWFCCLNSGRVGCRFRCSECNCGPNGNCNDPACHCFANTAIPCTPRLHSGDQPCACPPLKAPIPSLAP*
Ga0074055_100097493F074854GGAGGMKDGDIYLLSRQVQGDHGESYMQNVTVFASSAAQAVSLVDDQFASLRKTERGRERAYQPVPKFSVEKVSLEDYKMITAGITFY*
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