NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100240_111112

Scaffold Ga0100240_111112


Overview

Basic Information
Taxon OID3300006483 Open in IMG/M
Scaffold IDGa0100240_111112 Open in IMG/M
Source Dataset NameMicrobial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAgriculture and Agri-Food Canada
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1009
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada

Source Dataset Sampling Location
Location NameSherbrooke, QC, Canada
CoordinatesLat. (o)45.4Long. (o)-71.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033483Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0100240_1111121F033483N/AVTPGDACVALDIDGLPVVLVLPERDAELIMWPYWANRILQEGRGDE*
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