| Basic Information | |
|---|---|
| Taxon OID | 3300006482 Open in IMG/M |
| Scaffold ID | Ga0100242_108077 Open in IMG/M |
| Source Dataset Name | Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Agriculture and Agri-Food Canada |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5597 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sherbrooke, QC, Canada | |||||||
| Coordinates | Lat. (o) | 45.4 | Long. (o) | -71.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003987 | Metagenome / Metatranscriptome | 458 | Y |
| F004383 | Metagenome / Metatranscriptome | 440 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0100242_1080773 | F003987 | GGAGG | MIPALPCGTYSDGDTPAGAFFVAAFEDGDQPHHVTECRIETVLRALRALQACGYDDVEVGSIERDGKTHLLLIGLDGEARFGDRQMGCIAVMPVEVP* |
| Ga0100242_1080775 | F004383 | GGAGG | VTGEPNPALLESAFMARIKADEYRDALAALQKEFDERPDVIEIKRQIEYYEEARRQRIEQAKAEGVTKQGSFLLKIRTRKQRTVIPERFFARFGAETFVRCSTVAIGKAEAEVGKGTFDDCCEVEVKEIGVSVEYERPEAGE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |