NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0100242_108075

Scaffold Ga0100242_108075


Overview

Basic Information
Taxon OID3300006482 Open in IMG/M
Scaffold IDGa0100242_108075 Open in IMG/M
Source Dataset NameMicrobial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAgriculture and Agri-Food Canada
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27823
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (88.10%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada

Source Dataset Sampling Location
Location NameSherbrooke, QC, Canada
CoordinatesLat. (o)45.4Long. (o)-71.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022442Metagenome / Metatranscriptome214Y
F033483Metagenome / Metatranscriptome177Y
F105193Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0100242_1080754F022442AGGGGGMTFRPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGAYEDVEQGLRLRRSQTDRSLMLTEQGRVYSMPIRAVHDVREGREESCGISLLVTDARQLDDAHSRQTVLEVRA*
Ga0100242_10807540F105193GGGGGMAPLTLALDYDNPTALLETDGDGQPRRIYLVIDWASEIISAETRAHDDNTRSEYRWRGMGDAYTLPPLVDATQIREWVEDEVLPRAAPLLGAYETVWEDIEQFGRFPGHEDEKNDFDAWMDRIEPPLHDGGLWHVGDWLSGGVPDLSHETTDAAIESLADRIVEEAAAENVVIVAGREAVRAYLLDYRQDLRDAIPEPDCYQIRGYVVLEGVAKNFGGTAHVTLARKYSGKRVKIVVLDP
Ga0100242_1080755F033483GGAGGVTSGDASVSFDIDGLPVELVLPECCIEAMGCAYRASCILQEGRGDE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.