Scaffold Ga0068843_1033364

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068843_1033364

Scaffold Ga0068843_1033364

Overview

Basic Information
Taxon OID	3300006444 Open in IMG/M
Scaffold ID	Ga0068843_1033364 Open in IMG/M
Source Dataset Name	Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000188-3 ISU MetaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	653
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Iowa
Coordinates	Lat. (^o)	42.0266187	Long. (^o)	-93.6486594	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041209	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068843_10333641	F041209	N/A	TIVLPGEKPYIVAEETSAYSKRFDMIACCVGDRVLLPKIFTPKERADAEVKGINGHMLLQFIDDVLAQAVEGLDRYPLTLVLDRAPIHRDLDSIRQAFRDRGSESIKDILLLPPNAAKRLSPLDNALFHDWKEECRKHCPVTLRTIERVMNDAWMKMKPGPHYRGSGITRTKDPYFDCPAPQEHQHGS*

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