NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075495_1198121

Scaffold Ga0075495_1198121


Overview

Basic Information
Taxon OID3300006399 Open in IMG/M
Scaffold IDGa0075495_1198121 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9324
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087235Metagenome / Metatranscriptome110N
F105243Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0075495_119812121F105243GGAGMKKVLVNAIKLHCSVGRIEKGETAILPDEEVAKINKLRPHVITVIEDVVEKPAKKAPAKRKRARNENGTLKSDDPSTPDVNEAWE*
Ga0075495_11981218F087235GGCGGMALLTGQAKQTKSMNGSHHNNNIGRAGEFLALSKLAFVGISCTLVQHDIDDAYIKTPSGKLLTLQIKTANTKSGNRNQYRWHTSSVEGKKKSDIYALVAYEINKVYWVRGDDKIIKRTSTRLHPEAFGNENELLKQVINSFEV*
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