Scaffold Ga0099697_1461542

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099697_1461542

Scaffold Ga0099697_1461542

Overview

Basic Information
Taxon OID	3300006347 Open in IMG/M
Scaffold ID	Ga0099697_1461542 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	862
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006423	Metagenome	373	Y
F061278	Metagenome	132	Y
F077768	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099697_14615421	F077768	N/A	KSWIALRQEYQNDGKILSQIIKDYIDGMEKVMKKHSKSLRLVLTDYTKKKTLEPDPDSGDVAMWDELVVNNFTIQKIHVGPEFGPDFEDDDDIDGFPFELYQDTGDMVDYINRTLR*
Ga0099697_14615422	F006423	AGGA	MKTFKQHLNEKTEYYLDTSKDNTEKYVANDGDYWYTGKIGIRGGDRYLKFAATHGKDSYFERAKLKKTTPEKLEKDVGFTVDFKKLYKR*
Ga0099697_14615423	F061278	N/A	MRSFRGYLKEDVAWQQSASTKIFDFNQIQYMQIPLSSSTMEWIFQVQLPRATVFHVTSGIGLEKLKKVQNKKKSISAFFNMTA

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