NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068493_10165275

Scaffold Ga0068493_10165275


Overview

Basic Information
Taxon OID3300006341 Open in IMG/M
Scaffold IDGa0068493_10165275 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10765
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048371Metagenome148Y
F097522Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0068493_1016527513F048371N/AMDLRKIVGMSFLTFILISYLSYKAEWNWFMYIHMIQFFKYIDLPLEYWVFLDRYIFNGAL
Ga0068493_101652758F097522N/AMTNNNLAHLVYIKGLRAQIKEHYRAKYEQRIEYLVGANNELMKELEQYERVSMSEKI*

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