NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068481_1466900

Scaffold Ga0068481_1466900


Overview

Basic Information
Taxon OID3300006339 Open in IMG/M
Scaffold IDGa0068481_1466900 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2344
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000057Metagenome / Metatranscriptome3033Y
F002614Metagenome / Metatranscriptome543Y
F003103Metagenome507Y

Sequences

Protein IDFamilyRBSSequence
Ga0068481_14669001F000057N/AKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRAQALEEVDKLKYQAKLSKLKHLQNSGGGLEHEILELKAEIIEAESHHGSLKEAFELTKDEIKF*
Ga0068481_14669002F002614N/AMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQIGLIPKQTKILEGNVNPQLKIELKGVEDEDV*
Ga0068481_14669003F003103AGGAGGMKLYKLKASNFEAFFGTPEEPIERDVVTIAQTPSCDAFLYLSNTTFNQLELLNSVPIGFDFTYCQEWGLTIDNDVVDRVIIDLRKKSIQLGKTN*
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