NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068481_1300948

Scaffold Ga0068481_1300948


Overview

Basic Information
Taxon OID3300006339 Open in IMG/M
Scaffold IDGa0068481_1300948 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2674
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F002745Metagenome533Y
F036918Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0068481_13009481F036918AGGAMKTFKGYVKESITTDPFKIKGKPAWTESLSTMLFDLPRAGLKDVKIPLSPSIFKRIWPKPVRTTVFHLTDEEGIGKLKKMQGGKRSISAFFHID
Ga0068481_13009483F000659AGGAMITFKQYLKEANSKYIVSKNPSDKKWYVMGHVGNNKWMPVSNGFKNKTQAQKWAKSQDKVDSAASGEISGV*
Ga0068481_13009484F002745GAGMKSFKSYLTEFAQLSPSDLVFDVHTGDSSSLKIPISTTMFKRIWPDTIRATVFHATDSLEKLGKLEGGKKSISAFFSMMSRYMETGVATGGGIVVEMEADVLISARDDIMSQVDTQGRRWVEMSWFANAQLGRTGPEFGKVEKDLNWLIKNLVIKHLSPILGKTEVKNIGEFEIWGDIKRHIKGDGKILRLLIKEYFDGVERVLKKHKKVMSGIFYSYAKSKRMTDNSWDEQIVNNIKVKKVHLIDFTTKAPSLQDKLDSDKEYAKSKSWPVKVWDATETVDLEIYTRAVVKKEQPPRNIAY*
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