NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068481_1240577

Scaffold Ga0068481_1240577


Overview

Basic Information
Taxon OID3300006339 Open in IMG/M
Scaffold IDGa0068481_1240577 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1458
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0068481_12405771F015741GGAGMQLKQRFGIGLVCLMFSTGCSFPWGSIVPPVANFALGFYDANDYYSKECLWYDEVKLNDDTKKWLLESNPPEIVGKDLSQVARNNDIYKEVCKEHKSMADKMKDKA
Ga0068481_12405772F002078AGGAGGMDIAAIFEGQGWFAIAGQIVLVFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAQNEVEKEIDAAKAKVRDRSGMPDVLDGM*
Ga0068481_12405773F022754N/AMNELIITIMLVIPSPYKMVDWTINEVPTQIQVIHKSGLEVSYTATPVSCKFQPRHDREMVFRSPNNRCYSVYDLSSPRFVRHPDHWYKIELPQ*
Ga0068481_12405774F013820GGAGMTTMISTIIGFIDKAIPGQKTYALMLIAFLMMICQMMGFHSFSQEAWGLLGIGGAATWKMGADRDKPAVKK*
Ga0068481_12405775F036736N/AMDKLNEMLIGSLALIGGFITKRIFNNHDTLSDRITALEKVMLTKEDLGPLERNVDMIVTHLITKGKND*
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