| Basic Information | |
|---|---|
| Taxon OID | 3300006336 Open in IMG/M |
| Scaffold ID | Ga0068502_1255644 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1727 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010879 | Metagenome / Metatranscriptome | 298 | Y |
| F016206 | Metagenome / Metatranscriptome | 249 | Y |
| F023717 | Metagenome / Metatranscriptome | 209 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068502_12556443 | F010879 | AGGAG | MAQKRKVLKEVLFDDVEEKIEYDFLTRDQFFQKVPETRPMSARGLEIWEKYLQNPKGFKF |
| Ga0068502_12556444 | F016206 | AGGA | MAHAHKGKKKVSKAMGAILKAPKKAEKAVKAAVKHVNHTHWDTKDAFAAAIKKSGVNPDAINLNAEWDLYQSDKEGYRNHLKFKN* |
| Ga0068502_12556445 | F023717 | AGGAG | VAKSRSFKSKKELEKEGRTLGIELDRRHSKKDLIEELEAVEPASTDDVTWNSIEEFTEAVTSTGMIFDRDFIPVNIEALYEAFTSNPEEFKETPAYKFLTQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |