NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099675_1675429

Scaffold Ga0099675_1675429


Overview

Basic Information
Taxon OID3300006334 Open in IMG/M
Scaffold IDGa0099675_1675429 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0099675_16754291F013187N/APTKAKIKKKPKKPTWVWVYGDEMPEVWEHFGFTNPDPDDRIKLKFVKYESKEMQHG*
Ga0099675_16754292F012581AGGAGMAKYTIYAKKVYYYRKDINAQDMKSAEKRGADYEADDNAERLFESSGEEFYITSIEESEDEL*
Ga0099675_16754293F029779AGGAGMNYEEKYKQLCEALVGIDATERYTQEEIVDYAYKLKDIEEKFYDSKKT*

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