Scaffold Ga0099675_1030050

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0099675_1030050

Scaffold Ga0099675_1030050

Overview

Basic Information
Taxon OID	3300006334 Open in IMG/M
Scaffold ID	Ga0099675_1030050 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5643
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	25
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001479	Metagenome / Metatranscriptome	687	Y
F005533	Metagenome / Metatranscriptome	397	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_103005015	F001479	AGGAG	MSKEMLFLCDVYDKWLDENELPHRCASDILYGQDAMALTSNQKYWLESFISTWDIIAEVC
Ga0099675_10300505	F005533	AGGAG	MSYTKNEIALETLISNINNQFYYIGEENDKVAPIDVKKFTEYCVSFIDTLEIDND*
Ga0099675_10300507	F001026	AGGAGG	MALHKLVLDDMELTALITHLEGQNEIMCESRLNSSNPSETPDREEILLNLVFEKAFKIGWDAHINPKVDFDLHKNEDRIYQNKLYPQVYGQTK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.