| Basic Information | |
|---|---|
| Taxon OID | 3300006334 Open in IMG/M |
| Scaffold ID | Ga0099675_1027258 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11132 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (43.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000802 | Metagenome / Metatranscriptome | 885 | Y |
| F002490 | Metagenome / Metatranscriptome | 554 | Y |
| F061921 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0099675_10272581 | F061921 | N/A | MYDTYSTTFKYGNYNTYGELCLDDVNVWDFEFPLTADELEDAVNEQIGQAEAQAEAQIADYYTY* |
| Ga0099675_102725811 | F000802 | N/A | MYFDPTMTLEEYEDYKLQDEINIGYDVEDDDLPEEIEEDSWIDGLLTSGFHAVNDDELFGEEITGYSLY* |
| Ga0099675_102725816 | F002490 | N/A | MKEVKSLIREYVQDHYKYYGFYPYDVEVGDVLYSYEQYMDILSMTV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |