NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068488_1242546

Scaffold Ga0068488_1242546


Overview

Basic Information
Taxon OID3300006331 Open in IMG/M
Scaffold IDGa0068488_1242546 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F012582Metagenome / Metatranscriptome279Y
F037260Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0068488_12425461F037260N/ADNNNNRWVLIMAKKKKSIPFHVKHNYKQWTSDQGYSFWAKDEEDAKLYLEKTEGNLGSLKEVEVKSV*
Ga0068488_12425462F003091AGGAGMSMLPRKPITKPGEGKERQKYVSQERYLEERYQISLGLKGPKRLEGESFEDFHTRRKAENGLLHEYLRGVWMTDGNCTALTPKPCINCT*
Ga0068488_12425463F012582N/AMTEFHKKLRHLSTTMLHWAEDNKIQRKVVEGIAGEYEIPQRNGVDWKEDFKFVTKLDRMLADGLDDKLKKKEMEMCNQLYKYYGNVYVKI*
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