NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068499_1042550

Scaffold Ga0068499_1042550


Overview

Basic Information
Taxon OID3300006327 Open in IMG/M
Scaffold IDGa0068499_1042550 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5382
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)125
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F096026Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0068499_10425505F039681N/AMSLPNPTRLRIKPVYDVGYFGHDVHLPLTIAQTSNVTTLTPSTASFHQTLHDSAMPIDSTMQFIADSDKAELLHAGNDTNIDMSWLIVPDMTFWSYKIALTLGIGLKVSAHSSGNININNVHLTLTEVGDGAGDTVIADLTIPCGSANLTGTGEQITLFHADIMNKIQFKNGKPIKMRIQTEASKSGTATFQVGMLPIYPTLAPAIPKVWLLSQVEIHAHGSLDHAFPIWRSENNQELMDYSGCGQDGCA*
Ga0068499_10425509F096026GGAMAVIPTALLAKQGAKQASKISAQYLGFDFIPLITSLLIFYSIAFVFAKYMEGVQFATGGIRAIAGVLGYNMPSTEELPNTWTQLFSETGVKGFKFWDIINIVAILIIIATAFNFQKTTEATGNKVQPITWAIFTMLVSFIVITGVSKLVMKLQQRNFQSEFK*
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