NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068477_1162583

Scaffold Ga0068477_1162583


Overview

Basic Information
Taxon OID3300006326 Open in IMG/M
Scaffold IDGa0068477_1162583 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2969
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F008341Metagenome / Metatranscriptome335Y
F008692Metagenome / Metatranscriptome329Y
F015662Metagenome / Metatranscriptome253Y
F105490Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0068477_11625832F008692N/AMENKQTKEEECMPTSEEEFQADLDAQDMRYLHYCREQEEMYNDPVMNWSGLR*
Ga0068477_11625833F002348GGAMKPNEKWVKYGGWLLSLLSILIGASFLWPHINVALLGIALIYLGVRIFNFSTFEEYREKRIKLLHKLMD*
Ga0068477_11625835F015662N/AVKRVLRGAQVIKIGKNKGIMGIMKKQLIEKLIEDENPQIGFVEISSEESARVEIEVDLARERARERIQMEMYDDPYLNWSGHR*
Ga0068477_11625836F008341AGGMTETLRKIVVETMIPANFNFMARDLDGSVHVFENEPNLDYGTNKNPLPCDMWDDPSGGNTMPVSFKTSIHAGNLTEELGDWRDSCIEITEYTTEDN*
Ga0068477_11625837F105490GAGGMKGRTGKRLRQEGAINRVELTIEKYEKILPAEKELLKVGRKEKDLPPNVIPMLEKKIKHFEEKLERAKTTLENTKKNRGS*
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