NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068475_1103918

Scaffold Ga0068475_1103918


Overview

Basic Information
Taxon OID3300006318 Open in IMG/M
Scaffold IDGa0068475_1103918 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1232
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034603Metagenome174Y
F078839Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0068475_11039182F034603GGAGMRSFKGYLQERAPAWTESLSTALFDLTRTHYMIPLSPSILKRIWPKLPRTTVFHLTDRVGVQHLKKMQGGKRSISAFWNITARAIDDGIRTDGGYVVELEGDILAANPDDIMSQPDKTGRRWLTLSTLLDPVDKHGMGGGVKLKRMENDIEEMMIEIIMKYADDPIHMPNVKNSWIALGKEYGSRSPEDNKIKGQIIGDYIDGMEGVMKKHSKQLKSVLLDYSKKKIQEPDEDSGDTPEWDEVVVNNFKIQRIHVTPEYSLDFEGDKDIYGFPFELYHETEEMVDYINRTVQPIKI*
Ga0068475_11039183F078839AGGMTEEKLTTSIVLITFLALWFIVLFTFGLLVYQTSSYQNQVDDLIKENAKITTLWMEKN*
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