NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068475_1038900

Scaffold Ga0068475_1038900


Overview

Basic Information
Taxon OID3300006318 Open in IMG/M
Scaffold IDGa0068475_1038900 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8192
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001065Metagenome / Metatranscriptome789Y
F032034Metagenome / Metatranscriptome181N
F052888Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0068475_103890015F052888GGAMNPKQMRKIRYKAKRILLEWVKHLVKKENQYNITPEKFKVLLNTISYKWNGTTKVLQPMSYRWLVQTLKKNPEATLEDIEKIIEPSERALRRERMSKEGPIAF*
Ga0068475_10389003F032034AGGAGGMYLEKAHVKVIGTKYEHGPSRKEKKGATLSEFKFDDGIQAKDLAKFLENLQEDQGHRYCGDVTCNVTIDTTQE*
Ga0068475_10389004F001065AGGAGMSDVPILDKEVDDWGSDEQEEAYDKLQSLKQDCEGTPSKLYINEDEELQSYLMWFARMENLPYEITDGETKVC*
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