Scaffold Ga0068472

Basic Information
Taxon OID	3300006313 Open in IMG/M
Scaffold ID	Ga0068472_10180145 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006313 Open in IMG/M

Scaffold ID

Ga0068472_10180145 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2364
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2364

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	770
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

770

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F002745	Metagenome	533	Y
F101353	Metagenome / Metatranscriptome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0068472_101801451	F101353	GGA	MITFKQYVKEAQAPFNTRSMIFVNYESPALILSSTMIDRIFGQTKVDAWHVTDLDGLKGLKRIEGKKSSISVLTDIEPGRVKIFTKGVETGGGYCVSLEGSLLVSADFDIYSERLEGGRRAIAIESDDYPNLYKDMIKMQDKMWNKYGEKGKLDAGQDFNKLGNSLTQKQKGQFVKEWIDNCESILTKNKKAQEELRKFGRSDWSTYNESVINQIKIKRIYVINDNKLE
Ga0068472_101801452	F002745	AGGA	MKRFKEYLREFAQRSTSEYVFDTHSVNSSSLKIPISTSMFKRIWPDTIRATVFHTTDLAGLERLGKLEGGKKSISAFFSMMSRYMETGVATSGDVHVVAEMDADVLISARDDIWSIVDKTGRRWVEMSWFANAYLGGTGPKFNKVEKDLNTLIKNLVKKHLTPILGRSKVQSTHEYELWMLMKTHIKAGREGGGSRLRLVIKDYFDGIEKVLKKNKKVMGDIIYGYTKSKRMTDNAWDEQIVNNIKVKKVHVIKPHPSSDVWGPDEIMQHITDIKKWQVQVWDASIELEAYTREVVAKEIGR*
Ga0068472_101801453	F001493	N/A	KRIWPESIRSKVFHLTDYDGLGKLKKMQGKKKSISAFYNIEDYILAGGIKTDGGYVVELEGDVLAAAPDDVSSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKRIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGDKAMWDEIVVNNFKIKKIHVTEEFGEDWQEDDDIEGFPFELYPNGNGDLIDYIARTRN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068472_10180145

Overview

Ecosystem & Geography

Associated Families

Sequences