Scaffold Ga0082392_123916

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082392_123916

Scaffold Ga0082392_123916

Overview

Basic Information
Taxon OID	3300006232 Open in IMG/M
Scaffold ID	Ga0082392_123916 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities, 0.5 km from oil contamination,elevated hydrocarbon, Gulf of Mexico - BC315
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Yale Center for Genome Analysis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	541
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.3	Long. (^o)	-88.2	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001583	Metagenome / Metatranscriptome	668	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082392_1239161	F001583	N/A	LSYFHIFKKIYLKNYITSESDGILGGYAFFFHYIIALGICLSATHLADLTLTIIANIYSLFDNIYKTYYVIFTNKHLNTDQMTRIMIFHYFTPYYLYLIQLHVLFCHESDSDSGETTFEDKSGSYISFYDAFLKEIQDAYTLLVFIYF*SHHASAHTVNFFFFERWNIAELD

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