| Basic Information | |
|---|---|
| Taxon OID | 3300006191 Open in IMG/M |
| Scaffold ID | Ga0075447_10000238 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27715 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (51.16%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
| Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F033111 | Metagenome / Metatranscriptome | 178 | N |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| F095743 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075447_1000023810 | F089156 | N/A | MLLIQFNTSIDISIFPVEIIQTFKHDTYLIDLNLTDYSTINYITSNYDILSMQSNADMPYIDVYEAHTTSYTNVTTEDTLAPLIEKLDLLSMAEPHIVCFSWTTDRNYILDYRVKKLLEAGFLVVCGGGNADLPITDVSPVAVDGVIRVGGNKYNGQYQNWIDIYDVTVPDVPNTHEAAHIVCELMINKNLELDYSLGFYSESTIRSAPWPLRLAQTPSTAIKYYEFMPVSNLRYFSGEHLLPVREGDTVSVLYGGVPLEDFTSPRNIQLDTTVPRGCTFNTQSGWLYGTFKFKVPMFHRFLADINGQLFEYHIISADADTKPDFAECKQKYLNQPYDAPPFTMREYWVPMARPIKLLEPGDPFIRTFNLNDLHLYRSYE* |
| Ga0075447_1000023811 | F034245 | AGGAG | MRGVTFSEFGGGQNVEMFLHAPTQLPGTPMQEAVKTAITIREKYTKDLYVWCDYSVQHIYSQIAMQAFTMADIPFVAAIPVLSNNLSKRENDCTIAYCEQRNIPYKLFHIDVPAFFDSEEFELHGETFPTTQPQMTIVGKFFSMLPDCCVVYPGFMMHISNSDWTRTKNNGFMPFVPHVTQEHAAEHHGLEYTNFQEHYVDMYTSWMFTQSYGEVLKSATQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTNKLIGIEKLKSHFGHDKYDKELRQRLVPFSPLTLKYASLQYTVKVDTKLKEMLQTYHETNFEFFNKLF* |
| Ga0075447_1000023814 | F022909 | GGA | MDDKPNKEILRTFFDGKIGCIEYSEKWRPQLEEFCRVAKDLGYVNNESPEAMKVDEIQYHCMIHIPTNRIYAVAGVQYMPEYREGYYRIWTRLSRIPMEDIPMTRMTRYGRGEMPEFDGLLYFNCDWAWKQSNCKATFGTTLANKAYADNYVRSANTITDYVAKNWWRRKGIATPEGMTEFYGVPQVVWNMHFDKFKELS* |
| Ga0075447_1000023822 | F033111 | AGGA | MRNELPYYFEVPEMPKIPFDVSQYYIPDEDRLVAQEDKKNLDDIQGVKSRSQSANWYQSYMNVEENSRGQNKRDFKEVNLYEEVDFELTKLMKEFLGDTLHLRFNSILMLRTPANCNSRWHCEGPVFHTRQCALNFPVFGNADVMEGQWATFPRFKDIPARENEKMGFVTKTDMENTEILCKWDKPTMPAFYNTMIFHRGMNEHSNIDRVVLSCAVEDFSDINVVHRKYSTGKLFK* |
| Ga0075447_1000023843 | F095743 | GGA | MDSYWEWNKENFDWHYDPSSKQKDVTYVGRFVHENLEAVVQSTVDLLTDEDYYNEVSIKGEPYNEEAREIMEGYHNDLTRAGFNEHNTGGRQTRQNLNTLFQIMAQASGLWNPQIMFLEQPPGKFVPWHRDAYNNYR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |