NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10029901

Scaffold Ga0075441_10029901


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10029901 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2217
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016738Metagenome / Metatranscriptome245Y
F059366Metagenome / Metatranscriptome134N
F076518Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0075441_100299013F076518N/AMTLDHDQCVDVIKKYNAHIPAWSIAATMGITRNDIRAIRYCKKNHLPLTDYKCALSDPSYKFGPLSERPCAWDLRLSMKLARLPMSKWAEAL*
Ga0075441_100299015F016738GGAGLKDYLAEPKPVSPYKELINDYQGSVTKAAHGESGGLCHIYKSQLNPTARKKYNKRKVA*
Ga0075441_100299016F059366AGGAMISGFDSVKTKVLENAVFSSILAGSRRVSEKNRQIAINNEVKLLKHHRELGHQTAFENERSLKTERLLMREHRRWNLTKGYYAISEGVEL*
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