NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10001599

Scaffold Ga0075441_10001599


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10001599 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10810
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056918Metagenome137Y
F074050Metagenome / Metatranscriptome120Y
F077815Metagenome / Metatranscriptome117Y
F094425Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0075441_1000159912F056918N/AMKHLIVGDIVIAAFLGSPEPCEVIEVTDKKTKLYKLRMKSGTILPGVTWFKLLDSKQKKNKPWYILKYMKHEKSKVIETNKSNRADLEQALEQQRKFIRGEIKD*
Ga0075441_1000159918F077815GGAGMQGKDLKNRIKQIIRDEVDSLINEESYKFGTLADPKDMDPNDPMVKVNGFASLNRSSIRNQIVDRLSGALATAKDAAKGGDASYQAYKQLQDLISDAGILYKLIGAELDTANALEATRLKGGRRSIPIPKQ*
Ga0075441_1000159919F074050GAGGMKRSDIRKLIEQEIVNIKNEASAKVVSKGTVTDNARLATILGSLGTRAKGAFQKRKVVSQVIMGLASALEITPNEVLRAYMDYKKDAKGDASTKVKKDK*
Ga0075441_1000159923F094425N/AMKKKKEIKYGIQITKPFSKDMYNHNDMVAKQMKFNIKDAWHNEAIKFMGDDEWPTESNKYNKIIDIQKAVMAMGYGDGYTINEVERDFYSELDNMANWQLHENYSYMSFKGLVPRTRFMMVGFEWQKHDYSFCREEDLSEVLDMVGFEGTIDALNKI*
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