NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082021_1208758

Scaffold Ga0082021_1208758


Overview

Basic Information
Taxon OID3300006092 Open in IMG/M
Scaffold IDGa0082021_1208758 Open in IMG/M
Source Dataset NameActivated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNanyang Technological University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)147577
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)123 (84.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater Treatment Plant → Activated Sludge Microbial Communities From Wastewater Treatment Plant In Ulu Pandan, Singapore

Source Dataset Sampling Location
Location NameUlu Pandan, Singapore
CoordinatesLat. (o)1.3315Long. (o)103.7543Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039520Metagenome / Metatranscriptome163Y
F056159Metagenome / Metatranscriptome138N
F068522Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0082021_120875814F068522GGAGMRVLTSARVPNQPRTIIRIVRRVALATLAATMAVSFGLHATAYAQDASSTSRTHSLGVNLDFPDDGLVDSEQLCVALFSGTTPDLQKPPLLSRCIDPGADAVTFEGLRPGDFSVLLPGPGSDVEGQRYEGQLVTTNIPDDEQLDAFGIDINVGLSPEFSGTTGSVQVSVFGCPAGTNAGADKDSWVNECKSLAGGVPMTLTGIGSINDAAFQKVTGVSGNSSGRVEFTDLPAGAYEIGGVLPSNVSDNPALFAESSIDGSLGAISPAESLALRPTETVAVDVFLVLDDTPDSATTVGTTDLEITGALPG*
Ga0082021_120875863F039520GGAGGVTDLHQDELIVFAEISPNVLQILQHLCSASCHTFGGILEWCEARGDCAQAVVCPVCSSQFVVDDEELDELLRWTDSEGRALVCGVRWD*
Ga0082021_120875864F056159GAGGMVAQVPRPKREASPERWRAALSRAEKEGIEIRQLVGSGGWIATSGRDRHSAYELEVTGGLVHGCACPAAQHDDPVCKHRAAFLAEFGGLGDIAA*
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