NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081592_1038559

Scaffold Ga0081592_1038559


Overview

Basic Information
Taxon OID3300006076 Open in IMG/M
Scaffold IDGa0081592_1038559 Open in IMG/M
Source Dataset NameMicrobial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location NameManus Basin, Bismarck Sea
CoordinatesLat. (o)-3.7999163Long. (o)152.1008595Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F001493Metagenome683Y
F023211Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0081592_10385593F000245AGGAMKTFKEYSLDRKLDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMEGKKGMMAFNYQLEDK*
Ga0081592_10385596F001493GGAMGMGPTSQRSTPDSISCQKYLGKMLRFKQYLKEGPPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDLDGVGKLKKMQGKKKSISAFYNIEDYILAGGIKTDGGYVVELEGDVLAAAPDDVSSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKRIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGDKAMWDEIVVNNFKIKKIHVTEEFGEDWQEDDDIEGFPFELYPNGNGDLIDYIARTRN*
Ga0081592_10385597F023211AGGAMKRFKEYLREFAQRSTSEYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLAGLERLGKLEGGKKSISAFFSMMSRY
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