NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007881_1003230

Scaffold Ga0007881_1003230


Overview

Basic Information
Taxon OID3300006072 Open in IMG/M
Scaffold IDGa0007881_1003230 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5684
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Rhodococcus phage E3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037028Metagenome168Y
F065357Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0007881_100323010F065357AGTAGMDLERSFVRHFVKLDSFKVIWDKGIRSEHFFDDGVRELFDYSMDYYIRSQFKKTVDQDFLETKFDDYFAKHEWPEEEYLVGVLVEELITKYRKASTQSALLKAANALEDDPEAGISLALNSLTKIQSDTSTRERIEIYGEGYERRVNEYIDEIANPTKYRKGIYLGWDALNDHMYGIQK
Ga0007881_10032308F037028GGAGMVEEKRFDGPLNDYDDNSYDETVEVQPVISKEKLINDIDLTKADPRQLLLYFCSRFKETQGYDYNVDWVRETAILKSFKERYGADSGPMIKVLFDKHKGKINDMVMTITAFSKGIKWIQDTLYVALQQNRIKEENKPSSEGLLTTDDFIKRFNV*
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