Scaffold Ga0075163_10001336

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075163_10001336

Scaffold Ga0075163_10001336

Overview

Basic Information
Taxon OID	3300006056 Open in IMG/M
Scaffold ID	Ga0075163_10001336 Open in IMG/M
Source Dataset Name	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	33054
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (83.87%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location Name	Milwaukee, Wisconsin, USA
Coordinates	Lat. (^o)	43.023	Long. (^o)	-87.895	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020197	Metagenome / Metatranscriptome	225	Y
F054064	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075163_1000133611	F020197	AGGA	MDNVTSKPFSRGYVLRTTAKHMRKSVDISIRKTFERIAEFANDQEKSKEIFSTLSTLHSMRKQIDDFQLNNKEEFSGE*
Ga0075163_1000133612	F054064	AGGAG	MTTPKFNLPNQITKEITKMSIANLIGKKMSKTVKFMGEDIKISKLSVAEVLKIQEAAKDLDTDDSKGFEVLKTVIQSSVEGGTELQDGDFENFPMDELSKLSNEIMKYSGIGGEEQKGK*

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