NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066656_10347318

Scaffold Ga0066656_10347318


Overview

Basic Information
Taxon OID3300006034 Open in IMG/M
Scaffold IDGa0066656_10347318 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)959
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007396Metagenome352Y
F091657Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0066656_103473182F091657AGGMTNDEFLMTKEILNPNSEREALAPDGIIRSFELRHSFDICHSDFVIVQRYE*
Ga0066656_103473183F007396N/ALADLYVCWSKKAVYLGLCAQDVVEDTFYRDKIVRASDRAEWIVSINGFTKTIRGRIGAGLEPLADEPAVRLMNISGINGNLRNIACMELPAKLFGNDRFKPGDVIEFSSTFFAHCRAYRVEWRGRFTLCGT*

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