Scaffold Ga0081539

Basic Information
Taxon OID	3300005985 Open in IMG/M
Scaffold ID	Ga0081539_10000021 Open in IMG/M
Source Dataset Name	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005985 Open in IMG/M

Scaffold ID

Ga0081539_10000021 Open in IMG/M

Source Dataset Name

Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	360643
Total Scaffold Genes	381 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	275 (72.18%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

360643

Total Scaffold Genes

381 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

275 (72.18%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Ecosystem

Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location Name	University of Puerto Rico, San Juan, Puerto Rico
Coordinates	Lat. (^o)	18.402889	Long. (^o)	-66.050054	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Puerto Rico, San Juan, Puerto Rico

Coordinates

Lat. (^o)

18.402889

Long. (^o)

-66.050054

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000625	Metagenome / Metatranscriptome	977	Y
F009722	Metagenome	314	Y
F063453	Metagenome	129	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0081539_10000021122	F009722	GAG	MVQELSPESLGLTVCSKPTVAESSVPVVRDLRTEYQELAFDVCRVKEDYRDAGFRGMLQRQFGTVQDLIVDVFTGPGLHPTIGNIVPESGTALGLSLNDEWHRAESPHLRFTTSVEGRASENGFWAAGAVAHIQFDFYRTYDVAPFRMPQATIAIKHFDLPKMPFFGLGNQTSRRDRSLFELTETEVPILLDFPVAYGLTLSAQFTALHAASDPSPTFLSRFPAASAPGRRSRTTYVVPGLIATYRSPDVLYGLSGEARVGYEAYEALAGGPFSFDRFEAWTAVHYGIEDQPFAEATFPYVRALLGSSRLSAEANLIISEARRHSSVPFYLQPTLGGGDIHNENWLRSYANYRFRAPNVVAYGLTYERRLIDPIGISVFAQWGKVGRDVGELDFDRLKHSIGIGLTLRLGGRSVAEFSFAWGGGEDTRFYATGNTNNAIGFGARAAGTIGLRGVF*
Ga0081539_10000021146	F063453	N/A	MVTDFSSEMLLGDYSSDEHCFEFDVRTGVYSHLKLAAPRNGRAGYAGMAQLLRSPREGIVPVAKYLLDGDAWFSVGAEQWKLFDRSLTLEHRERYGVFLCELSVHRGGQCIRRLRYLRRDWFAAIIDPAYDHLDFSLANLPVDFVPHDSSSLEKQRADFIEMWSSDSNATDPRDRQ*
Ga0081539_10000021374	F000625	GGAGG	MAATVSGAIRELLEQTMVTMDALLEASDRELAMPSSHGCAQGKDTWALITNDIDHEKIHTGQVLEGRYESRITASPMQRLVAEWLAERARFIGSLVGLTDEQFNSETAAGQWTYRIVAKHVLALEQDSLKTIAADRASRLSATSQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0081539_10000021

Overview

Ecosystem & Geography

Associated Families

Sequences