NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075108_10050106

Scaffold Ga0075108_10050106


Overview

Basic Information
Taxon OID3300005913 Open in IMG/M
Scaffold IDGa0075108_10050106 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1579
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003357Metagenome / Metatranscriptome492N
F025595Metagenome / Metatranscriptome201N
F060352Metagenome / Metatranscriptome133N
F076488Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0075108_100501061F003357AGGAGGMKRNSWIVKQMFADAKNNLGWVFKGVLVAGGFVAGIKILTFFNMPKEIVFPVMWIAFILLMAYKWYSMKYDWSKEDKSYDRASKKYTKKLKELK*
Ga0075108_100501062F076488AGGAGMRTEYDEVKEILVKHDVDLDRDIDYMMETIVYGEPLFQELFEYFIGDMPYDVAKGRADLMSDEWILDRVQALGLIKEEA*
Ga0075108_100501063F025595AGGAGGMTVDINGLSTKLEVLTSIKENIQDGDTDTAIDMVNQMIELEPEPGQRRPVADALDHHQIMQKGIVR*
Ga0075108_100501066F060352GGAGGMKKVSKLKKGSIFICSVCAKGFVHKKPDTLVGKLGPIPVQFCKPCFKKVMKHDHLALNDSRKVA*
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