NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075109_1062568

Scaffold Ga0075109_1062568


Overview

Basic Information
Taxon OID3300005912 Open in IMG/M
Scaffold IDGa0075109_1062568 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1351
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020855Metagenome221N
F068214Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0075109_10625681F020855GGAMSKDIVMYQLDTPYSSQILFLNSENSIFKNIDGEGSYQYDFQTPIQLPTNCQMLISITDAQMPNIIPNVSSSNNTISFSIPTFSKLFTITIREDDGITDRVYNVQEWLAVVNEKITYEAVSQFSLYGGFNTSTSKITWYCNYPFQILSNVEYPTTCFDLIGFKKNRFNDVVYESEGVLLSSVINPSYHITMPSCVNFSGTRFIFVKFKNISVNNMNSRGVTDQAVVRIDNNAPFGFMIFYRPIEVHRFIINRQTINNISFTLTDTQGKELNIFSNDAQITIKLEYMYKPNIRSMEEGTINYELRKLSKVLTDKPSIAGSY
Ga0075109_10625682F068214N/AMTVKLVPQTSSVIPPGKFIYTDETFLIQPPKYIQGEAFPQQGKALVPAHFSYGHHNPDFTPIYTPPTQLAMNYNTYIYNSVTGYT*
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