Scaffold Ga0068863

Basic Information
Taxon OID	3300005841 Open in IMG/M
Scaffold ID	Ga0068863_100036051 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005841 Open in IMG/M

Scaffold ID

Ga0068863_100036051 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4710
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

4710

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016408	Metagenome / Metatranscriptome	247	Y
F025043	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068863_1000360512	F016408	GGAG	MPVTESQVAATELENVISKVRVLFERDDKFYSNIKKREVEKISHRQMRVPLELRPGGSFQYFNPDGGDLGRGGGPTFDKAVLNSVFLSENIEYTKLTQWATDDARKAVINSVRRLTATALDEMRRQLDSQMMQTGDGVIGVVTTDTPAGGSNVITLTTDGFGARLMRYGQKVQVFDAALAVNKGSGTITQWDVEGKTISITPQIAGVAPTDKIVTDGLSAPASLPALFGVPYHHSNASAGTWLGFSRATTPEIRANRVNAGGAGLTLPLPRLALNKIGNRVGIDNDINPTAWTHPCQMQAYEEIGQLVSIIQKTAKEEGLNMYFGNNMQLAGASIKASYNWDKTRIDFIVDEVWGRGEILPIGFYTTDGRKIFEIRGPSGGVATAEIFYMVVGMQTYVSNPAACSYIDNLAVPVGY*
Ga0068863_1000360517	F025043	AGGAG	MLVGEFPGLNQANRRTIRAPTNPMDKSTVVSILPKHISERKATISPGIFEIPPGSVEMPSLLVVGTSSWWREIDENQPLLEIPVSSIQVADSIVKDYCNGLLACNMGDMMPGLFYLPGEYTVNKLQTDHAAMLHSALAKQKKWFLELIRIADILWSRSNGNPLSISEDARLACRELNISSKPWLGDHQQAELVRCVACGSLRNALFPICQTCKAVADPELAKKLNLTFAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068863_100036051

Overview

Ecosystem & Geography

Associated Families

Sequences