NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074471_10717361

Scaffold Ga0074471_10717361


Overview

Basic Information
Taxon OID3300005831 Open in IMG/M
Scaffold IDGa0074471_10717361 Open in IMG/M
Source Dataset NameMicrobial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5199
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameAstoria, Oregon, USA
CoordinatesLat. (o)46.17469Long. (o)-123.84933Alt. (m)Depth (m).06
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007170Metagenome / Metatranscriptome356N
F056616Metagenome / Metatranscriptome137N
F103260Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0074471_107173612F103260GGAMGIKAIKAVAPEVEHGILEVDLSEWAGEGAIVKFRQPKAADYFPDATELQKIRMSYAEMAPNLLVNCLIIGKCYIPDMDDPSDAAFIRVLLDLSRKNTQAFYAIYWSFIGKYIDVSVTKEVDEAKNDSAV*
Ga0074471_107173613F056616AGGAGMAFTKSFGLVGENCVVTIAFGGFQDGSPSAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSIDIELLVDGTQQADGSPIFFNKEGYYCQVVITPGALSAKTFVGVVTATGIGIAAGEAVTETATIMLGANGVTTAWTSA*
Ga0074471_107173614F007170AGGMAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALCGARVFTTPNYRITVWDTESGAMSMARIQTIMNRIDTLLDNQTVTTTTPRLYVRRTSTDQTFALSDGGRTDYGVTAVYRCLTQQ*
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