NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074474_1020259

Scaffold Ga0074474_1020259


Overview

Basic Information
Taxon OID3300005824 Open in IMG/M
Scaffold IDGa0074474_1020259 Open in IMG/M
Source Dataset NameMicrobial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10678
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameIlwaco, Washington, USA
CoordinatesLat. (o)46.26975Long. (o)-123.94603Alt. (m)Depth (m).02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024267Metagenome / Metatranscriptome206Y
F028780Metagenome / Metatranscriptome190N
F040591Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0074474_102025911F024267N/AMKIEITQYGHKSTYEFEHDDVDLEELLFYIERVIRLTGYEFDGHLEIVNEEE*
Ga0074474_10202595F040591N/AMKIKDEYKGKTIVKNTSLGNMTVIVDNIDVNRYQYYVSIGFGYLFEKETATAPIRYEGIEADEQTEAPAPTPTPKRKRKTNAKANTKRNQG*
Ga0074474_10202596F028780N/AMKATLDRYISSHYEELYRYTRYFCSKYNPKLTIDTVISNAYLHCLEINDNTEDVGKVKSYILNSIKRQVIWKNVNSFKDERILASEIAVPDQFDDEEDLNYKIAIEQQYQGWKSSVDIYRDGLSDNVKIAVAKAYFDKGLTTARSMAQYFNIPVTSAHYLISDIKSTLKTIHHENKR*
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