NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078744_1082908

Scaffold Ga0078744_1082908


Overview

Basic Information
Taxon OID3300005822 Open in IMG/M
Scaffold IDGa0078744_1082908 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, MM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAarhus University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location NameAarhus Bay station M5
CoordinatesLat. (o)56.10555Long. (o)10.463333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006827Metagenome364Y
F061785Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0078744_10829082F061785GAGGMEETLQRLSVGFFGWIATDTIQSVDLMLGVVSKAVLITLTVLSIYKLWRELK*
Ga0078744_10829083F006827N/AITINYLVYETLDDAIARADTEGARRGYAYHRVGSGTRYRTYPQETADAKYALVVDGYELTEDEESAITNSVTFPEPEEV*

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