Basic Information | |
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Taxon OID | 3300005820 Open in IMG/M |
Scaffold ID | Ga0078747_106804 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, PM2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Aarhus University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3063 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark |
Source Dataset Sampling Location | ||||||||
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Location Name | Aarhus Bay station M5 | |||||||
Coordinates | Lat. (o) | 56.10555 | Long. (o) | 10.463333 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002344 | Metagenome / Metatranscriptome | 568 | Y |
F008944 | Metagenome / Metatranscriptome | 325 | Y |
F016831 | Metagenome / Metatranscriptome | 244 | Y |
F079320 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078747_1068044 | F016831 | N/A | MTLTEEKMIKIAKKALGLTITDSFNDGCDLYCYNESTVDGYDVWVLTHSLEDINICENVYYYESDLASAVMEEIQYNGGSETLLHMDEYLWDDLYMDDAMLEHFGETIDDIIENNDEEGYGLTPAEIQELKDEYGLEAEEIEETVS* |
Ga0078747_1068046 | F002344 | AGGA | MIYNKLKPHIKAKMKENAKEYESVNWLFDKLKNKDHYSDLTIDEVRSICTFGDVFYHDLTQRDIIWGDWLINK* |
Ga0078747_1068047 | F008944 | N/A | MKKFNGMESNLIIDALQFYVSQVEKDILELEKDGKTSIFAPGFYTMISKELKDKVKSMTKKQITN* |
Ga0078747_1068049 | F079320 | N/A | SWTKFYQDRGNKEAIRKCQTEIAQLKQAFNQLKSKKNGKK* |
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