NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1033598

Scaffold Ga0079957_1033598


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1033598 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3359
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F007469Metagenome / Metatranscriptome350Y
F009461Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10335982F002162N/AMPKYDYMCDGEGLVIVLDLPMDHKIPHCQVCGAKLRRVYTAVPSIFKGTGWAGKDG*
Ga0079957_10335983F007469AGGAGGMGELQIIDGSGLTATFTDDAVVVEPSMVTCDLCNDDRLLSEGDLLRCYSCHAINRIPYNA
Ga0079957_10335984F004599GGAGGMAFNLDDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATVWRDSKDAAPAASNIAFGSRETFMPNMKKWYVEDTASSSLGRAIILLKGSNKTATKDDMKRVENEPIKNIYGKSGNSKIIEMALRKSFADDTKETKEPTVWSVGDPLETLPTKPKQQECLHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDARWGKLTAAGSWYFEGGE*
Ga0079957_10335986F009461GAGMKINGLTVLWFMIATGLLAYAVSLWQTEIYNRGYWRGRATGWDMHRRMINIKQQSDEVFDYDKN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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