NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1018596

Scaffold Ga0079957_1018596


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1018596 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4927
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006260Metagenome / Metatranscriptome377Y
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0079957_101859610F008688N/AMNRFNKIMLGSLAAILLTAMTVEPPKLKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKESHNYSVEERELTE*
Ga0079957_101859611F007859GAGMKNLLIIALLCTGCTSGMYLRYSYNRALENLPPCSRVHAINNDYITYSMIENSTNSVYTVYTNYYRAYYNCDGKIINTTKN*
Ga0079957_101859615F006260N/AMEKELTIKDKVSNSIIIQHDDLKFDGKNITIPRYYIDSLCEYIKDFKTEGELQADVEDYQAFRSFLYDVQEYKNGGN*
Ga0079957_10185965F019476N/AMNNNKIKSAKIVLEIEWESVDDSDLPSLWDWKRIKMPMDLTKVKYIGIQTPNGPENVTNWMGN*
Ga0079957_10185966F024047GGAMTIVKTSEIIEWVKNAVEKKMIKELNIPNAKVYLSCDRPNPDVILETKNADGDLQIVRFLII*
Ga0079957_10185968F009135N/AMSDPKYYLKVNLPPNFNDLDAEVIKKDLMTYINSRNQWGALYGPKSTKKGITIDKVIYRTNED*
Ga0079957_10185969F013524N/AMKTKQVIVNLREFTQNNCNTTLDPKLCEDIRYLCDEVERLSQEIVKANNFMDEDYITIQRYKNKLNKYESF*
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