NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1017537

Scaffold Ga0079957_1017537


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1017537 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5111
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002794Metagenome / Metatranscriptome529Y
F006139Metagenome / Metatranscriptome380Y
F007579Metagenome348Y
F010535Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_101753710F002794GGAGMSESAAWNQGELTEETRKLVLEQTAMTNHTMAMFGLIDEIMAVSKNPHASIIQRLKTMKNQLSLENPMPLYDVT
Ga0079957_10175374F007579GAGGMATKAEIDSQIGNATRELAPGTTWKYNAPGDGYYCLEWMDDPALQPTEAATMAKATELANNPQPID*
Ga0079957_10175375F006139N/AMETEVVVAVIGGGFAVLVALISKIGRDNKKDHGEVHQTLGRIEQKIDHHVENH*
Ga0079957_10175377F001872AGCAGGMNEFIKQVLHHSNNAMWNNGSWGVRDVRSKPGTMSVHATGRAVDLSYRGGERHPNASRKAALPFVELLCAHANDLGIEMVIDYFPAPYGRAWRCDRQAWKKYSKPTVSGSPGGDWFHVEITPQAADSVIFVKAAFLKVFGEIPPKA*
Ga0079957_10175378F010535AGGAMTDPQIVDYSVYTGVMDNGQEILVQIFSSPESGKFLMGQIAFRSHASSWGVPIPLEKR*
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