| Basic Information | |
|---|---|
| Taxon OID | 3300005805 Open in IMG/M |
| Scaffold ID | Ga0079957_1009171 Open in IMG/M |
| Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7596 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wichita, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001299 | Metagenome / Metatranscriptome | 727 | Y |
| F015202 | Metagenome / Metatranscriptome | 256 | Y |
| F015856 | Metagenome / Metatranscriptome | 251 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0079957_10091713 | F001299 | AGGTGG | MNDLNKPEYLDDNDPKRDYDFFRQDHGGVATAHNGVADRLLQNDALYNSMKGDWQRTDTNKSGNIKVTTGREDGKFFIKREQNVDEIIRHCREYRAAAEAGIPDPMAPIMPDGKLGYKWMELPRVISIRISDDYFGGMPWDAIKHDKTLKAQFYRVVEREYPQFVCYPKGRLPIPVDVPYPTKRGQQRFFKGI* |
| Ga0079957_10091716 | F015856 | AGG | MIQDTTVDFYNARLTVDLTQLKNLRPEQQDRVRHYGSQAEALLKNRELAMFIHHYKFSIADELASIRGHQPDDNANRIALSHELSGIDNFVNSLKRAVYYKNKLGNTEVPEV* |
| Ga0079957_10091717 | F015202 | N/A | MLQDGEAAIFILDSKFDPSKDIYQIPPPSGNLQFLEVGMNRIQQDTMAMIGMTTPQDVFNPEVMAPGNSGVKLQIALTPNQIIQDNTVRNAAEGLKEALWLVWRTLVQYGDDYGVKKLAASCHPEKRPEFLDYMAFDDMNFCDRKQIQIELALGMRSEENALARLQIIQKCQMDLYQITQAMTAQGTLTPEVYKKVKKPFADTLYTLGVKDADIYLPSDEEVAQMIQKGMEAAQNKQPTPQEQKDTSAAELNQARTQQIMASIEGVDADSQLNYMSMAMAERPGRPQDYGH* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |