NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1005532

Scaffold Ga0079957_1005532


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1005532 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10267
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F004154Metagenome / Metatranscriptome450Y
F005349Metagenome / Metatranscriptome403Y
F013636Metagenome / Metatranscriptome269Y
F016000Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100553214F016000N/AMTSKEFVLWLKGFTEGVHEFNVTPKQWDLLKDKLAEVKDETPIGFPFGVPNTAPMVNPLITPSHTYPYRPYEIYCGSGSSDTTITTTPGGGSITYAKPQFVTSTTYGYPSGSSINYTNNSHNED*
Ga0079957_10055322F013636N/AMISPNVAWHKYLNSSNPIINKYLNNFGDELLQQTFQRLILAIKSKKSHIILFRFKDSDIISKIYQKDYIPALELLLNLCIRLEKYEMCRDIHTQLKLIKLKKARGNPSKRKVTTVHNT*
Ga0079957_10055325F005349N/AMYVIHKQLIPIDTNMGDPNWAKRQVWVLKLNSNDTLDEFEDLESAEEKKNELTNSDPTGRIYKISIKNEDGSFSDL*
Ga0079957_10055326F004154N/AMWNKVKYYVLRYWVSISFLLLAFYFYEPTQSITHCSPNTLSSDTPKTFFGIDEMTLMWILMAIAHSANTCYCDIKSLLKKK*
Ga0079957_10055328F002092N/AMRQTEQKALDYLKSNPIVANFIEKVNAERKEYYEKTGHTTKKTELTVEIGNKFIRLWDGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYGVYGPEYL*
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