Scaffold Ga0079957_1003622

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079957_1003622

Scaffold Ga0079957_1003622

Overview

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1003622 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13076
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100362212	F002260	AGGA	MSVPYQRVSNATVQDIIFYDPAAERRASQMNVDWNDYFKVGSQEILYQLEFGWWPKYCDTVFGASYYQNLPNGSLISSFNPSLLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNDVDKTNFDHALRRYQAEYEKALQLMNFYDLNQNAPNGPTTKLEENWTADVDYFNNDRRYF*
Ga0079957_10036229	F003807	AGGAG	MTDQWLQTEEEKLRSLLADEAKLMPMLDTMMATIKQMKAKQAFRIALLNQLLEAKYDKYSGN*

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