| Basic Information | |
|---|---|
| Taxon OID | 3300005805 Open in IMG/M |
| Scaffold ID | Ga0079957_1000134 Open in IMG/M |
| Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 59304 |
| Total Scaffold Genes | 86 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (87.21%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wichita, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005167 | Metagenome / Metatranscriptome | 410 | Y |
| F008023 | Metagenome / Metatranscriptome | 340 | Y |
| F008806 | Metagenome | 327 | Y |
| F009327 | Metagenome / Metatranscriptome | 319 | Y |
| F009741 | Metagenome / Metatranscriptome | 313 | Y |
| F010448 | Metagenome / Metatranscriptome | 303 | Y |
| F025484 | Metagenome / Metatranscriptome | 201 | Y |
| F035737 | Metagenome / Metatranscriptome | 171 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0079957_100013418 | F009327 | AGGAG | MRGNRVEGRFKIDYETSSMDEGMVDELRLPVGTTVDWWTWNPAAFVADYEEYIDPIYDTSNQTDGLGRRWDEPFDMPVILAQQIRGQNVMNERGFYTIDTLRLVIAVDDINRLLPDIITNPTDHIKDRVIFQNSVFTPTRVNPRGRYKERYSVVTIDLNQVNAEELVNDPQFQAYAE* |
| Ga0079957_10001342 | F008023 | AGGAG | VANKATSPLDATGVAAERAAKKNAAELKKRQEELSVANQLEAESLEKDVFDPKKPDAPLVLDEIEDVGVSVSNEYVVIRTITDIDDMTFGVVNGTPQSYSFKSGVKYRVPRHIADYLEQLGYIWRPN* |
| Ga0079957_100013430 | F008806 | N/A | MSFLLAEDEALRNLLLGMTVTDQKSVNEEGPQRTVGVWFGQPDQELRDQRYPYITIDMVDIAEDFSRSMRGRVKPKYLADPETMGTSEDDWDNDLHGWEVDFPIPVNIDYQITTYARQPRHDRQILAQLLYTKIPLRFAILETGPNTVAGTNRRLDVLDIAKRDVSENGKRLFVNAITVRVSSEIAPATYKKLYKVQNLEITGTDDNPQLGRGEFTAIDTITIP* |
| Ga0079957_100013449 | F010448 | AGAAG | MKDGDISNVSSPQLIATTDVVIKLVEEETRRLLGKKTSYKVGDIELLAANKLWLLSNNYGLSLELAGFESEGWSEELLDKAFEKLERRVVNPFNYWQLYENVDELVGLIPYRPNLKGIIDKPDRVARYGSAGIELANL* |
| Ga0079957_100013459 | F035737 | GGTGG | MMSNGFEVIDQEWAEELERGVEAYTDMLFEAIYEGTEEELTETLSGEPFCGCNRCFWRETLFYVVPKLLKGYEEGKIELEE* |
| Ga0079957_100013473 | F009741 | GAGG | MTQKYDGVYDYTKPWRAPVQPDQVAKRWQYNGPWSSNMERLTSQALMVMSIPGSEISQMVRPPLPQIRLFPDRYGYDRRAVGIDDVITVDRNYVEPRTSWYSGSPAGYTGASRNTLGSE* |
| Ga0079957_100013475 | F025484 | AGGAG | MADDGDGMLTLELQAQELTKYNGSSNCPTCGMIINPVEFLANQGHCTGCTTAKRQKRAKELMQ* |
| Ga0079957_100013477 | F005167 | AGG | MAVNSSRSMNKSLNDGATDGKYRKVRPDTEENAMNTSATEANRQSLHPFYGYGFTTTEYPNKVNPGK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |