NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079367_1012887

Scaffold Ga0079367_1012887


Overview

Basic Information
Taxon OID3300005782 Open in IMG/M
Scaffold IDGa0079367_1012887 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAarhus University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4073
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location NameAarhus Bay station M5
CoordinatesLat. (o)56.10555Long. (o)10.463333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031354Metagenome / Metatranscriptome182Y
F059653Metagenome / Metatranscriptome133Y
F091296Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0079367_10128875F031354AGGAMKTTFDINDILYPMLNTALVIDTIDSGRVYRNKKPLDSELQDIVIIPLSNYVGDEIINDATFMINCYCKNFNNGTPDIAKLRAITDAVAAVIEAHNNTSNYYVFDIMNQILLNDIDQKSMSYVNLRISCFIEK*
Ga0079367_10128877F091296GGAGGVIKRYPHTATISYYTPGTYNTAGIYTVGTLVSIGIVCNAQPNSTKYIIGESGDMIGYNWFISSPIFAGAGDIPEAAKLTFFSKEHIILQLFEYQKHIEMKC*
Ga0079367_10128878F059653GGAMTNKEALQSQTEYSNDDLLEKLLLDRGVETGGTYVAANAKDIDLCAANLYFTLAAHPDLREGALAIKYNGNQLIAMAKRILKKYDMDESTITGEAIW*
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