Basic Information | |
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Taxon OID | 3300005758 Open in IMG/M |
Scaffold ID | Ga0078117_1056460 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5223 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002621 | Metagenome / Metatranscriptome | 542 | Y |
F015720 | Metagenome / Metatranscriptome | 252 | Y |
F058105 | Metagenome | 135 | N |
Protein ID | Family | RBS | Sequence |
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Ga0078117_10564602 | F058105 | N/A | MNPHPTIIEAAKLLREKWPTCSTWNDDQLLNWIGIFNKVRQFGIVQDEAGKCVGVGAVRFLNSVVEADDINNNFKDGHIAWIEMVVGTEPRAVQTLWLAMMGMCSKNVTKLGGVRKGVSRLYDFNRYFKLLMNNRICYGRNI* |
Ga0078117_10564606 | F002621 | AGG | LIGSGKHHQPKFNTAMRPKISKLIWLGALPTFLGCQMTKVVLVPSGDPVMLAAPVKARVYAFDSNKKLVGPSTVVLPAGWYALPKN* |
Ga0078117_10564607 | F015720 | N/A | MKNTKTTLAGIGAILVAIGGGMKALFDGDPSTNLDLTATIAAVTAGIGLIWAKDAEKKAE |
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