| Basic Information | |
|---|---|
| Taxon OID | 3300005758 Open in IMG/M |
| Scaffold ID | Ga0078117_1004476 Open in IMG/M |
| Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4836 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Singapore | |||||||
| Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023555 | Metagenome / Metatranscriptome | 209 | Y |
| F025977 | Metagenome / Metatranscriptome | 199 | Y |
| F048942 | Metagenome / Metatranscriptome | 147 | Y |
| F068754 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078117_10044762 | F023555 | GAGG | MDHMNTFKAIGLADPFFTIKTAFYKKGKFGRQSQFFEWELKKGEDIYIEFYENTYDNDGRSTGIEPMLAERQLFKLKYNPYFHEEYDVTETVDPDGKIDRKYLIPVNEMVAVLSNGQEISYALYEKRKEEAALEIPQLQSTLSIFPDFEEEFAPKTNETSNEVSEILLEIAENFKKLATALKGK* |
| Ga0078117_10044764 | F025977 | N/A | MEDIFLKLVRENITPNSYYILHCIKNGIIPCSFVNKDLEIRRLISENWLNEDLTLTDKSIIFTTEIEGYFKKSKKKTSKDLMGHNFMQNIEAYVTIFPNKKLSSGKYARVPAKNLENAFRWFFEMYDYSWETIFAATQKYVLEYESKNYEYMRTAQYFLRKQNVDKSWDSDLATYCEFLKDNPDDDVVLFPDLIV* |
| Ga0078117_10044766 | F048942 | N/A | MAIKVKEMKDDAIVEIKVNKSFYLMAKAASFTILNTMNIQEKNEEYLKKLMNSTYEELEPVERTFYTIILLLAEIEKQATEANLYNEKEVLEPGDPGYVAPTED* |
| Ga0078117_10044769 | F068754 | N/A | GTLLDIYFKMETQEIKKLVAAIAEEHYSITDGVDGNLNYLWYMYHKGTKKDEFRPFVYMAELMLLKKYNYITTTEVQNVVEMMKSDDKDNLHMATLTIKNLRELRIKEHGIYSKDNKAYKDLNYTYAFDVLNHTVFLQTMAEK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |