NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078058_101141

Scaffold Ga0078058_101141


Overview

Basic Information
Taxon OID3300005757 Open in IMG/M
Scaffold IDGa0078058_101141 Open in IMG/M
Source Dataset NameMicrobial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS872
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2432
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Deep Sea Hydrothermal Vent Diffuse Flow → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Source Dataset Sampling Location
Location NameMid-Cayman Rise
CoordinatesLat. (o)18.375Long. (o)-81.797Alt. (m)Depth (m)2372
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013484Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0078058_1011412F013484GGAGGMDVRFHFPDGTLSTEHQALVEALNRFLAVLPDDEDQEVVVRLVMELLELADVASQGEIARAAGYSERTLRFYKRRLHDEGLGGLFDHPIPGRPAVSTQPAVEGAVVQAIVEAIITQHTLPDDAALAEAVNHHLADKKDPSAGQVTTSMVETIRLGWGIKRLPVRQQLQDAQTSPAPQQEMVHLGRTRVGGAFILAVLLVEEGLLRFAHLLSMAPGYAVTSVQWLLTAIFSVICGVERAFHLDDVRDIGFALLTGRPRPLSHSTFQHLLHAIASWDAIRFYLATARQAVRKVGEGTRRISLDGHVLPRHTKLVELAKGRIASTGRVLKAEELISAFDLDAGSFLALRVRQGGKNPTHVLLALVKELCMHRRGLEGLLRLFFDRGSYKGFIFEALSKLDNVHFYTPAVRYPTNVEQWEALTEEDFEPDPFVFDKHADLLPEEQPRFRLADITMEINIWEGKRLTGTVEVRAIVVHDPQGQTPKERWPFVLLTDDRDTPARELANEWGDHWGHEFAHRVGKHDLCLDILPPGYTLTTTRDEQGRLQRQVEYDTASFFLSAWLRCLVFSLMTLFGQALGGECANMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQEELRPLLEELNAKRVALPWLNGLVIQFSIAQDEPLHPLTEPEKRQRLFGDG*
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